networkBMA

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see networkBMA.

Regression-based network inference using Bayesian Model Averaging


Bioconductor version: 3.9

An extension of Bayesian Model Averaging (BMA) for network construction using time series gene expression data. Includes assessment functions and sample test data.

Author: Chris Fraley, Wm. Chad Young, Ling-Hong Hung, Kaiyuan Shi, Ka Yee Yeung, Adrian Raftery (with contributions from Kenneth Lo)

Maintainer: Ka Yee Yeung <kayee at u.washington.edu>

Citation (from within R, enter citation("networkBMA")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("networkBMA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("networkBMA")
networkBMA PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Bayesian, GeneExpression, GeneTarget, GraphsAndNetwork, Network, NetworkInference, Software
Version 2.24.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL (>= 2)
Depends R (>= 2.15.0), stats, utils, BMA, Rcpp (>= 0.10.3), RcppArmadillo (>= 0.3.810.2), RcppEigen (>= 0.3.1.2.1), leaps
Imports
System Requirements liblapack-dev
URL
See More
Suggests
Linking To Rcpp, RcppArmadillo, RcppEigen, BH
Enhances
Depends On Me
Imports Me
Suggests Me DREAM4
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package networkBMA_2.24.0.tar.gz
Windows Binary networkBMA_2.23.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) networkBMA_2.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/networkBMA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/networkBMA
Bioc Package Browser https://code.bioconductor.org/browse/networkBMA/
Package Short Url https://bioconductor.org/packages/networkBMA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive