netbenchmark

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see netbenchmark.

Benchmarking of several gene network inference methods


Bioconductor version: 3.9

This package implements a benchmarking of several gene network inference algorithms from gene expression data.

Author: Pau Bellot, Catharina Olsen, Patrick Meyer

Maintainer: Pau Bellot <pau.bellot at upc.edu>

Citation (from within R, enter citation("netbenchmark")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netbenchmark")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netbenchmark")
Netbenchmark HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews GeneExpression, GraphAndNetwork, Microarray, Network, NetworkInference, Software
Version 1.16.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License CC BY-NC-SA 4.0
Depends grndata(>= 0.99.3)
Imports Rcpp (>= 0.11.0), minet, GENIE3, c3net, PCIT, GeneNet, tools, pracma, Matrix, corpcor, fdrtool
System Requirements
URL https://imatge.upc.edu/netbenchmark/
See More
Suggests RUnit, BiocGenerics, knitr, graph
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netbenchmark_1.16.0.tar.gz
Windows Binary netbenchmark_1.16.0.zip
Mac OS X 10.11 (El Capitan) netbenchmark_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/netbenchmark
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netbenchmark
Bioc Package Browser https://code.bioconductor.org/browse/netbenchmark/
Package Short Url https://bioconductor.org/packages/netbenchmark/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive