matter

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see matter.

A framework for rapid prototyping with binary data on disk


Bioconductor version: 3.9

Memory-efficient reading, writing, and manipulation of structured binary data on disk as vectors, matrices, arrays, lists, and data frames.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("matter")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("matter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matter")
matter: Rapid prototyping with data on disk PDF R Script
matter: Supplementary 1 - Simulations and comparative benchmarks PDF R Script
matter: Supplementary 2 - 3D mass spectrometry imaging case study PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.10.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Artistic-2.0
Depends R (>= 3.5), BiocParallel, methods, stats, biglm
Imports BiocGenerics, digest, irlba, utils
System Requirements
URL https://github.com/kuwisdelu/matter
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Suggests BiocStyle, testthat
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package matter_1.10.0.tar.gz
Windows Binary matter_1.10.0.zip
Mac OS X 10.11 (El Capitan) matter_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/matter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/matter
Bioc Package Browser https://code.bioconductor.org/browse/matter/
Package Short Url https://bioconductor.org/packages/matter/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive