iteremoval

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see iteremoval.

Iteration removal method for feature selection


Bioconductor version: 3.9

The package provides a flexible algorithm to screen features of two distinct groups in consideration of overfitting and overall performance. It was originally tailored for methylation locus screening of NGS data, and it can also be used as a generic method for feature selection. Each step of the algorithm provides a default method for simple implemention, and the method can be replaced by a user defined function.

Author: Jiacheng Chuan [aut, cre]

Maintainer: Jiacheng Chuan <jiacheng_chuan at outlook.com>

Citation (from within R, enter citation("iteremoval")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iteremoval")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iteremoval")
An introduction to iteremoval HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software, StatisticalMethod
Version 1.4.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL-2
Depends R (>= 3.5.0), ggplot2 (>= 2.2.1)
Imports magrittr, graphics, utils, GenomicRanges, SummarizedExperiment
System Requirements
URL https://github.com/cihga39871/iteremoval
Bug Reports https://github.com/cihga39871/iteremoval/issues
See More
Suggests testthat, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iteremoval_1.4.0.tar.gz
Windows Binary iteremoval_1.4.0.zip
Mac OS X 10.11 (El Capitan) iteremoval_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iteremoval
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iteremoval
Bioc Package Browser https://code.bioconductor.org/browse/iteremoval/
Package Short Url https://bioconductor.org/packages/iteremoval/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive