imageHTS

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see imageHTS.

Analysis of high-throughput microscopy-based screens


Bioconductor version: 3.9

imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

Author: Gregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("imageHTS")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("imageHTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("imageHTS")
Analysis of high-throughput microscopy-based screens with imageHTS PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, ImmunoOncology, Preprocessing, Software, Visualization
Version 1.34.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License LGPL-2.1
Depends R (>= 2.9.0), EBImage(>= 4.3.12), cellHTS2(>= 2.10.0)
Imports tools, Biobase, hwriter, methods, vsn, stats, utils, e1071
System Requirements
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Suggests BiocStyle, MASS
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Depends On Me PGPC
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package imageHTS_1.34.0.tar.gz
Windows Binary imageHTS_1.34.0.zip
Mac OS X 10.11 (El Capitan) imageHTS_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/imageHTS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/imageHTS
Bioc Package Browser https://code.bioconductor.org/browse/imageHTS/
Package Short Url https://bioconductor.org/packages/imageHTS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive