iSeq

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see iSeq.

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models


Bioconductor version: 3.9

Bayesian hidden Ising models are implemented to identify IP-enriched genomic regions from ChIP-seq data. They can be used to analyze ChIP-seq data with and without controls and replicates.

Author: Qianxing Mo

Maintainer: Qianxing Mo <qianxing.mo at moffitt.org>

Citation (from within R, enter citation("iSeq")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSeq")
iSeq PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeq, Sequencing, Software
Version 1.36.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License GPL (>= 2)
Depends R (>= 2.10.0)
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSeq_1.36.0.tar.gz
Windows Binary iSeq_1.36.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) iSeq_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSeq
Bioc Package Browser https://code.bioconductor.org/browse/iSeq/
Package Short Url https://bioconductor.org/packages/iSeq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive