genomeIntervals

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see genomeIntervals.

Operations on genomic intervals


Bioconductor version: 3.9

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

Author: Julien Gagneur <gagneur at genzentrum.lmu.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme

Maintainer: Julien Gagneur <gagneur at genzentrum.lmu.de>

Citation (from within R, enter citation("genomeIntervals")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("genomeIntervals")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genomeIntervals")
Overview of the genomeIntervals package. PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Genetics, Infrastructure, Software
Version 1.40.0
In Bioconductor since BioC 2.4 (R-2.9) (15 years)
License Artistic-2.0
Depends R (>= 2.15.0), methods, intervals (>= 0.14.0), BiocGenerics(>= 0.15.2)
Imports GenomeInfoDb(>= 1.5.8), GenomicRanges(>= 1.21.16), IRanges(>= 2.3.14), S4Vectors(>= 0.7.10)
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me girafe
Imports Me easyRNASeq
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package genomeIntervals_1.40.0.tar.gz
Windows Binary genomeIntervals_1.40.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) genomeIntervals_1.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/genomeIntervals
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/genomeIntervals
Bioc Package Browser https://code.bioconductor.org/browse/genomeIntervals/
Package Short Url https://bioconductor.org/packages/genomeIntervals/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive