geneplotter

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see geneplotter.

Graphics related functions for Bioconductor


Bioconductor version: 3.9

Functions for plotting genomic data

Author: R. Gentleman, Biocore

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("geneplotter")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geneplotter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneplotter")
How to assemble a chromLocation object PDF R Script
Visualization of Microarray Data PDF R Script
Reference Manual PDF
README Text
NEWS Text

Details

biocViews Software, Visualization
Version 1.62.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License Artistic-2.0
Depends R (>= 2.10), methods, Biobase, BiocGenerics, lattice, annotate
Imports AnnotationDbi, graphics, grDevices, grid, RColorBrewer, stats, utils
System Requirements
URL
See More
Suggests Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db
Linking To
Enhances
Depends On Me HD2013SGI, Hiiragi2013, HMMcopy, maEndToEnd, PGPC
Imports Me biocGraph, DESeq, DESeq2, DEXSeq, ENmix, EnrichmentBrowser, flowQ, GSVA, IsoGeneGUI, JunctionSeq, MethylSeekR, RNAinteract, RNAither
Suggests Me AgiMicroRna, BiocCaseStudies, biocGraph, Category, chimera, GOstats, Single.mTEC.Transcriptomes
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geneplotter_1.62.0.tar.gz
Windows Binary geneplotter_1.62.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) geneplotter_1.62.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/geneplotter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/geneplotter
Bioc Package Browser https://code.bioconductor.org/browse/geneplotter/
Package Short Url https://bioconductor.org/packages/geneplotter/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive