genbankr

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see genbankr.

Parsing GenBank files into semantically useful objects


Bioconductor version: 3.9

Reads Genbank files.

Author: Gabriel Becker [aut, cre], Michael Lawrence [aut]

Maintainer: Gabriel Becker <becker.gabriel at gene.com>

Citation (from within R, enter citation("genbankr")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("genbankr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genbankr")
An introduction to genbankr HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Software
Version 1.12.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License Artistic-2.0
Depends methods
Imports BiocGenerics, IRanges(>= 2.13.15), GenomicRanges(>= 1.31.10), GenomicFeatures(>= 1.31.5), Biostrings, VariantAnnotation, rtracklayer, S4Vectors(>= 0.17.28), GenomeInfoDb, Biobase
System Requirements
URL
See More
Suggests RUnit, rentrez, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package genbankr_1.12.0.tar.gz
Windows Binary genbankr_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) genbankr_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/genbankr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/genbankr
Bioc Package Browser https://code.bioconductor.org/browse/genbankr/
Package Short Url https://bioconductor.org/packages/genbankr/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive