gQTLBase

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see gQTLBase.

gQTLBase: infrastructure for eQTL, mQTL and similar studies


Bioconductor version: 3.9

Infrastructure for eQTL, mQTL and similar studies.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("gQTLBase")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gQTLBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gQTLBase")
gQTLBase infrastructure for eQTL archives HTML R Script
Reference Manual PDF

Details

biocViews Software
Version 1.16.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License Artistic-2.0
Depends
Imports GenomicRanges, methods, BatchJobs, BBmisc, S4Vectors, BiocGenerics, foreach, doParallel, bit, ff, rtracklayer, ffbase, GenomicFiles, SummarizedExperiment
System Requirements
URL
See More
Suggests geuvStore2, knitr, rmarkdown, BiocStyle, RUnit, GGtools, Homo.sapiens, IRanges, erma, GenomeInfoDb, gwascat, geuvPack
Linking To
Enhances
Depends On Me
Imports Me geuvStore2, gQTLstats, yriMulti
Suggests Me parglms
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gQTLBase_1.16.0.tar.gz
Windows Binary gQTLBase_1.16.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) gQTLBase_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gQTLBase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gQTLBase
Bioc Package Browser https://code.bioconductor.org/browse/gQTLBase/
Package Short Url https://bioconductor.org/packages/gQTLBase/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive