caOmicsV

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see caOmicsV.

Visualization of multi-dimentional cancer genomics data


Bioconductor version: 3.9

caOmicsV package provides methods to visualize multi-dimentional cancer genomics data including of patient information, gene expressions, DNA methylations, DNA copy number variations, and SNP/mutations in matrix layout or network layout.

Author: Henry Zhang

Maintainer: Henry Zhang <hzhang at mail.nih.gov>

Citation (from within R, enter citation("caOmicsV")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("caOmicsV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("caOmicsV")
Intrudoction_to_caOmicsV PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, Network, RNASeq, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL (>=2.0)
Depends R (>= 3.2), igraph (>= 0.7.1), bc3net (>= 1.0.2)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package caOmicsV_1.14.0.tar.gz
Windows Binary caOmicsV_1.14.0.zip
Mac OS X 10.11 (El Capitan) caOmicsV_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/caOmicsV
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/caOmicsV
Bioc Package Browser https://code.bioconductor.org/browse/caOmicsV/
Package Short Url https://bioconductor.org/packages/caOmicsV/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive