beadarraySNP

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see beadarraySNP.

Normalization and reporting of Illumina SNP bead arrays


Bioconductor version: 3.9

Importing data from Illumina SNP experiments and performing copy number calculations and reports.

Author: Jan Oosting

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Citation (from within R, enter citation("beadarraySNP")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("beadarraySNP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beadarraySNP")
beadarraySNP.pdf PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel
Version 1.50.0
In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)
License GPL-2
Depends methods, Biobase(>= 2.14), quantsmooth
Imports
System Requirements
URL
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Suggests aCGH, affy, limma, snapCGH, beadarray, DNAcopy
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package beadarraySNP_1.50.0.tar.gz
Windows Binary beadarraySNP_1.50.0.zip
Mac OS X 10.11 (El Capitan) beadarraySNP_1.50.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/beadarraySNP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/beadarraySNP
Bioc Package Browser https://code.bioconductor.org/browse/beadarraySNP/
Package Short Url https://bioconductor.org/packages/beadarraySNP/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive