anamiR

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see anamiR.

An integrated analysis package of miRNA and mRNA expression data


Bioconductor version: 3.9

This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.

Author: Ti-Tai Wang [aut, cre], Tzu-Pin Lu [aut], Chien-Yueh Lee[ctb,] Eric Y. Chuang [aut]

Maintainer: Ti-Tai Wang <r04945002 at ntu.edu.tw>

Citation (from within R, enter citation("anamiR")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("anamiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("anamiR")
Introduction to anamiR HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AssayDomain, BiologicalQuestion, DifferentialExpression, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Genetics, Microarray, Normalization, Pathways, ResearchField, Sequencing, Software, Technology, WorkflowStep, miRNA
Version 1.12.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL-2
Depends R (>= 3.5)
Imports stats, DBI, limma, lumi, agricolae, RMySQL, DESeq2, SummarizedExperiment, gplots, gage, S4Vectors
System Requirements
URL https://github.com/AllenTiTaiWang/anamiR
Bug Reports https://github.com/AllenTiTaiWang/anamiR/issues
See More
Suggests knitr, rmarkdown, data.table
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package anamiR_1.12.0.tar.gz
Windows Binary anamiR_1.12.0.zip
Mac OS X 10.11 (El Capitan) anamiR_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/anamiR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/anamiR
Bioc Package Browser https://code.bioconductor.org/browse/anamiR/
Package Short Url https://bioconductor.org/packages/anamiR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive