alevinQC

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see alevinQC.

Generate QC Reports For Alevin Output


Bioconductor version: 3.9

Generate QC reports summarizing the output from an alevin run. Reports can be generated as html or pdf files, or as shiny applications.

Author: Charlotte Soneson [aut, cre] , Avi Srivastava [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("alevinQC")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alevinQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alevinQC")
alevinQC HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews QualityControl, SingleCell, Software
Version 1.0.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License MIT + file LICENSE
Depends R (>= 3.6)
Imports rmarkdown, tools, methods, ggplot2, GGally, dplyr, rjson, shiny, shinydashboard, DT, stats, utils, tximport(>= 1.11.5), cowplot
System Requirements
URL https://github.com/csoneson/alevinQC
Bug Reports https://github.com/csoneson/alevinQC/issues
See More
Suggests knitr, BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alevinQC_1.0.0.tar.gz
Windows Binary alevinQC_1.0.0.zip
Mac OS X 10.11 (El Capitan) alevinQC_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/alevinQC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alevinQC
Bioc Package Browser https://code.bioconductor.org/browse/alevinQC/
Package Short Url https://bioconductor.org/packages/alevinQC/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive