affyQCReport

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see affyQCReport.

QC Report Generation for affyBatch objects


Bioconductor version: 3.9

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Author: Craig Parman <craig.parman at bifx.org>, Conrad Halling <conrad.halling at bifx.org>, Robert Gentleman

Maintainer: Craig Parman <craig.parman at bifx.org>

Citation (from within R, enter citation("affyQCReport")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affyQCReport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyQCReport")
affyQCReport: Methods for Generating Affymetrix QC Reports PDF R Script
Reference Manual PDF

Details

biocViews Microarray, OneChannel, QualityControl, Software
Version 1.62.0
In Bioconductor since BioC 1.7 (R-2.2) (18.5 years)
License LGPL (>= 2)
Depends Biobase(>= 1.13.16), affy, lattice
Imports affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable
System Requirements
URL
See More
Suggests tkWidgets(>= 1.5.23), affydata(>= 1.4.1)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me BiocCaseStudies
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affyQCReport_1.62.0.tar.gz
Windows Binary affyQCReport_1.62.0.zip
Mac OS X 10.11 (El Capitan) affyQCReport_1.62.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affyQCReport
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affyQCReport
Bioc Package Browser https://code.bioconductor.org/browse/affyQCReport/
Package Short Url https://bioconductor.org/packages/affyQCReport/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive