TSCAN

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TSCAN.

TSCAN: Tools for Single-Cell ANalysis


Bioconductor version: 3.9

TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.

Author: Zhicheng Ji, Hongkai Ji

Maintainer: Zhicheng Ji <zji4 at jhu.edu>

Citation (from within R, enter citation("TSCAN")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TSCAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TSCAN")
TSCAN: Tools for Single-Cell ANalysis PDF R Script
Reference Manual PDF

Details

biocViews GUI, GeneExpression, Software, Visualization
Version 1.22.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL(>=2)
Depends R (>= 2.10.0)
Imports ggplot2, shiny, plyr, grid, fastICA, igraph, combinat, mgcv, mclust, gplots
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TSCAN_1.22.0.tar.gz
Windows Binary TSCAN_1.22.0.zip
Mac OS X 10.11 (El Capitan) TSCAN_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TSCAN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TSCAN
Bioc Package Browser https://code.bioconductor.org/browse/TSCAN/
Package Short Url https://bioconductor.org/packages/TSCAN/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive