SVM2CRM

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SVM2CRM.

SVM2CRM: support vector machine for cis-regulatory elements detections


Bioconductor version: 3.9

Detection of cis-regulatory elements using svm implemented in LiblineaR.

Author: Guidantonio Malagoli Tagliazucchi <malagoli at ingm.org>

Maintainer: Guidantonio Malagoli Tagliazucchi <guidantonio.malagolitagliazucchi at unimore.it>

Citation (from within R, enter citation("SVM2CRM")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SVM2CRM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SVM2CRM")
The \Rpackage{SVM2CRM} Package PDF R Script
Reference Manual PDF
README Text
NEWS Text

Details

biocViews ChIPSeq, ChipOnChip, Preprocessing, Software, SupportVectorMachine
Version 1.16.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-3
Depends R (>= 3.2.0), LiblineaR, SVM2CRMdata
Imports AnnotationDbi, mclust, GenomicRanges, IRanges, zoo, squash, pls, rtracklayer, ROCR, verification
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SVM2CRM_1.16.0.tar.gz
Windows Binary SVM2CRM_1.16.0.zip
Mac OS X 10.11 (El Capitan) SVM2CRM_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SVM2CRM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SVM2CRM
Package Short Url https://bioconductor.org/packages/SVM2CRM/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive