PrecisionTrialDrawer

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PrecisionTrialDrawer.

A Tool to Analyze and Design NGS Based Custom Gene Panels


Bioconductor version: 3.9

A suite of methods to design umbrella and basket trials for preision oncology.

Author: Giorgio Melloni , Alessandro Guida, Luca Mazzarella

Maintainer: Giorgio Melloni <melloni.giorgio at gmail.com>

Citation (from within R, enter citation("PrecisionTrialDrawer")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PrecisionTrialDrawer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PrecisionTrialDrawer")
Bioconductor style for HTML documents HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, GeneExpression, Sequencing, Software, SomaticMutation, WholeGenome
Version 1.0.1
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-3
Depends R (>= 3.6)
Imports graphics, grDevices, stats, utils, methods, cgdsr, parallel, stringr, reshape2, data.table, RColorBrewer, BiocParallel, magrittr, biomaRt, XML, httr, jsonlite, ggplot2, ggrepel, grid, S4Vectors, IRanges, GenomicRanges, LowMACAAnnotation, googleVis, shiny, shinyBS, DT, brglm, matrixStats
System Requirements
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Suggests BiocStyle, knitr, rmarkdown, dplyr
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Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PrecisionTrialDrawer_1.0.1.tar.gz
Windows Binary PrecisionTrialDrawer_1.0.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) PrecisionTrialDrawer_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/PrecisionTrialDrawer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PrecisionTrialDrawer
Bioc Package Browser https://code.bioconductor.org/browse/PrecisionTrialDrawer/
Package Short Url https://bioconductor.org/packages/PrecisionTrialDrawer/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive