PICS

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PICS.

Probabilistic inference of ChIP-seq


Bioconductor version: 3.9

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <rsautera at fhcrc.org>

Citation (from within R, enter citation("PICS")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")
The PICS users guide PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeq, Clustering, Sequencing, Software, Visualization
Version 2.28.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License Artistic-2.0
Depends R (>= 2.14.0), BiocGenerics(>= 0.1.3)
Imports methods, stats4, IRanges, GenomicRanges, graphics, grDevices, stats, Rsamtools, GenomicAlignments, S4Vectors
System Requirements GSL (GNU Scientific Library)
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Suggests ShortRead, rtracklayer, parallel
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PICS_2.28.0.tar.gz
Windows Binary PICS_2.28.0.zip
Mac OS X 10.11 (El Capitan) PICS_2.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PICS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PICS
Bioc Package Browser https://code.bioconductor.org/browse/PICS/
Package Short Url https://bioconductor.org/packages/PICS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive