PGSEA

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PGSEA.

Parametric Gene Set Enrichment Analysis


Bioconductor version: 3.9

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

Citation (from within R, enter citation("PGSEA")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PGSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PGSEA")
HOWTO: PGSEA PDF R Script
HOWTO: PGSEA Example Workflow PDF R Script
Reference Manual PDF

Details

biocViews Microarray, Software
Version 1.58.0
In Bioconductor since BioC 2.0 (R-2.5) (17 years)
License GPL-2
Depends R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
System Requirements
URL
See More
Suggests GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
Linking To
Enhances
Depends On Me GeneExpressionSignature
Imports Me
Suggests Me gskb
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PGSEA_1.58.0.tar.gz
Windows Binary PGSEA_1.58.0.zip
Mac OS X 10.11 (El Capitan) PGSEA_1.58.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PGSEA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PGSEA
Bioc Package Browser https://code.bioconductor.org/browse/PGSEA/
Package Short Url https://bioconductor.org/packages/PGSEA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive