OmicsMarkeR

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see OmicsMarkeR.

Classification and Feature Selection for 'Omics' Datasets


Bioconductor version: 3.9

Tools for classification and feature selection for 'omics' level datasets. It is a tool to provide multiple multivariate classification and feature selection techniques complete with multiple stability metrics and aggregation techniques. It is primarily designed for analysis of metabolomics datasets but potentially extendable to proteomics and transcriptomics applications.

Author: Charles E. Determan Jr. <cdetermanjr at gmail.com>

Maintainer: Charles E. Determan Jr. <cdetermanjr at gmail.com>

Citation (from within R, enter citation("OmicsMarkeR")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OmicsMarkeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OmicsMarkeR")
A Short Introduction to the OmicMarkeR Package PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Classification, FeatureExtraction, Metabolomics, Software
Version 1.16.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-3
Depends R (>= 3.2.0)
Imports graphics, stats, utils, plyr (>= 1.8), data.table (>= 1.9.4), caret (>= 6.0-37), DiscriMiner (>= 0.1-29), e1071 (>= 1.6-1), randomForest (>= 4.6-10), gbm (>= 2.1), pamr (>= 1.54.1), glmnet (>= 1.9-5), caTools (>= 1.14), foreach (>= 1.4.1), permute (>= 0.7-0), assertive (>= 0.3-0), assertive.base (>= 0.0-1)
System Requirements
URL http://github.com/cdeterman/OmicsMarkeR
Bug Reports http://github.com/cdeterman/OmicsMarkeR/issues/new
See More
Suggests testthat, BiocStyle, knitr
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OmicsMarkeR_1.16.0.tar.gz
Windows Binary OmicsMarkeR_1.16.0.zip
Mac OS X 10.11 (El Capitan) OmicsMarkeR_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OmicsMarkeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OmicsMarkeR
Bioc Package Browser https://code.bioconductor.org/browse/OmicsMarkeR/
Package Short Url https://bioconductor.org/packages/OmicsMarkeR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive