Mirsynergy

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Mirsynergy.

Mirsynergy


Bioconductor version: 3.9

Detect synergistic miRNA regulatory modules by overlapping neighbourhood expansion.

Author: Yue Li

Maintainer: Yue Li <yueli at cs.toronto.edu>

Citation (from within R, enter citation("Mirsynergy")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Mirsynergy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Mirsynergy")
Mirsynergy PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, Software
Version 1.20.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-2
Depends R (>= 3.0.2), igraph, ggplot2
Imports graphics, grDevices, gridExtra, Matrix, parallel, RColorBrewer, reshape, scales, utils
System Requirements
URL http://www.cs.utoronto.ca/~yueli/Mirsynergy.html
See More
Suggests glmnet, RUnit, BiocGenerics, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Mirsynergy_1.20.0.tar.gz
Windows Binary Mirsynergy_1.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) Mirsynergy_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Mirsynergy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Mirsynergy
Bioc Package Browser https://code.bioconductor.org/browse/Mirsynergy/
Package Short Url https://bioconductor.org/packages/Mirsynergy/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive