MCRestimate

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MCRestimate.

Misclassification error estimation with cross-validation


Bioconductor version: 3.9

This package includes a function for combining preprocessing and classification methods to calculate misclassification errors

Author: Marc Johannes, Markus Ruschhaupt, Holger Froehlich, Ulrich Mansmann, Andreas Buness, Patrick Warnat, Wolfgang Huber, Axel Benner, Tim Beissbarth

Maintainer: Marc Johannes <m.johannes at dkfz.de>

Citation (from within R, enter citation("MCRestimate")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MCRestimate")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MCRestimate")
HOW TO use MCRestimate PDF R Script
Reference Manual PDF

Details

biocViews Classification, Software
Version 2.40.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License GPL (>= 2)
Depends R (>= 2.7.2), golubEsets(>= 1.4.6)
Imports e1071 (>= 1.5-12), pamr (>= 1.22), randomForest (>= 3.9-6), RColorBrewer (>= 0.1-3), Biobase(>= 2.5.5), graphics, grDevices, stats, utils
System Requirements
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Suggests xtable (>= 1.2-1), ROC(>= 1.8.0), genefilter(>= 1.12.0), gpls(>= 1.6.0)
Linking To
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MCRestimate_2.40.0.tar.gz
Windows Binary MCRestimate_2.40.0.zip
Mac OS X 10.11 (El Capitan) MCRestimate_2.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MCRestimate
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MCRestimate
Bioc Package Browser https://code.bioconductor.org/browse/MCRestimate/
Package Short Url https://bioconductor.org/packages/MCRestimate/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive