KEGGprofile

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see KEGGprofile.

An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway


Bioconductor version: 3.9

KEGGprofile is an annotation and visualization tool which integrated the expression profiles and the function annotation in KEGG pathway maps. The multi-types and multi-groups expression data can be visualized in one pathway map. KEGGprofile facilitated more detailed analysis about the specific function changes inner pathway or temporal correlations in different genes and samples.

Author: Shilin Zhao, Yan Guo, Yu Shyr

Maintainer: Shilin Zhao <shilin.zhao at vanderbilt.edu>

Citation (from within R, enter citation("KEGGprofile")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KEGGprofile")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGprofile")
KEGGprofile: Application Examples PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews KEGG, Pathways, Software
Version 1.26.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL (>= 2)
Depends RCurl
Imports AnnotationDbi, png, TeachingDemos, XML, KEGG.db, KEGGREST, biomaRt
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KEGGprofile_1.26.0.tar.gz
Windows Binary KEGGprofile_1.26.0.zip
Mac OS X 10.11 (El Capitan) KEGGprofile_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/KEGGprofile
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/KEGGprofile
Bioc Package Browser https://code.bioconductor.org/browse/KEGGprofile/
Package Short Url https://bioconductor.org/packages/KEGGprofile/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive