IMAS

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see IMAS.

Integrative analysis of Multi-omics data for Alternative Splicing


Bioconductor version: 3.9

Integrative analysis of Multi-omics data for Alternative splicing.

Author: Seonggyun Han, Younghee Lee

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Citation (from within R, enter citation("IMAS")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IMAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IMAS")
IMAS : Integrative analysis of Multi-omics data for Alternative Splicing PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, ImmunoOncology, RNASeq, Regression, SNP, Sequencing, Software, Transcription
Version 1.8.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL-2
Depends R (> 3.0.0), GenomicFeatures, ggplot2, IVAS
Imports doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb, stats, ggfortify, grDevices, methods, Matrix, utils, graphics, gridExtra, grid, lattice, Rsamtools, survival, BiocParallel, GenomicAlignments, parallel
System Requirements
URL
See More
Suggests BiocStyle, RUnit
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IMAS_1.8.0.tar.gz
Windows Binary IMAS_1.8.0.zip
Mac OS X 10.11 (El Capitan) IMAS_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IMAS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/IMAS
Bioc Package Browser https://code.bioconductor.org/browse/IMAS/
Package Short Url https://bioconductor.org/packages/IMAS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive