GISPA

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GISPA.

GISPA: Method for Gene Integrated Set Profile Analysis


Bioconductor version: 3.9

GISPA is a method intended for the researchers who are interested in defining gene sets with similar, a priori specified molecular profile. GISPA method has been previously published in Nucleic Acid Research (Kowalski et al., 2016; PMID: 26826710).

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>

Citation (from within R, enter citation("GISPA")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GISPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GISPA")
GISPA:Method for Gene Integrated Set Profile Analysis HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneSetEnrichment, GenomeWideAssociation, Software, StatisticalMethod
Version 1.8.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL-2
Depends R (>= 3.3.2)
Imports Biobase, changepoint, data.table, genefilter, graphics, GSEABase, HH, lattice, latticeExtra, plyr, scatterplot3d, stats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GISPA_1.8.0.tar.gz
Windows Binary GISPA_1.8.0.zip
Mac OS X 10.11 (El Capitan) GISPA_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GISPA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GISPA
Bioc Package Browser https://code.bioconductor.org/browse/GISPA/
Package Short Url https://bioconductor.org/packages/GISPA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive