DelayedMatrixStats

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see DelayedMatrixStats.

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects


Bioconductor version: 3.9

A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

Author: Peter Hickey <peter.hickey at gmail.com>

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("DelayedMatrixStats")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DelayedMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DelayedMatrixStats")
Overview of DelayedMatrixStats HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.6.1
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License MIT + file LICENSE
Depends DelayedArray(>= 0.9.8)
Imports methods, matrixStats (>= 0.55.0), Matrix, S4Vectors(>= 0.17.5), IRanges, HDF5Array(>= 1.7.10), BiocParallel
System Requirements
URL https://github.com/PeteHaitch/DelayedMatrixStats
Bug Reports https://github.com/PeteHaitch/DelayedMatrixStats/issues
See More
Suggests testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark, profmem
Linking To
Enhances
Depends On Me
Imports Me batchelor, bsseq, dmrseq, minfi, scater, scran
Suggests Me DelayedArray, mbkmeans
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DelayedMatrixStats_1.6.1.tar.gz
Windows Binary DelayedMatrixStats_1.6.1.zip
Mac OS X 10.11 (El Capitan) DelayedMatrixStats_1.6.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/DelayedMatrixStats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DelayedMatrixStats
Bioc Package Browser https://code.bioconductor.org/browse/DelayedMatrixStats/
Package Short Url https://bioconductor.org/packages/DelayedMatrixStats/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive