DBChIP

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DBChIP.

Differential Binding of Transcription Factor with ChIP-seq


Bioconductor version: 3.9

DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.

Author: Kun Liang

Maintainer: Kun Liang <kliang at stat.wisc.edu>

Citation (from within R, enter citation("DBChIP")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DBChIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DBChIP")
DBChIP PDF R Script
Reference Manual PDF

Details

biocViews ChIPSeq, Genetics, Sequencing, Software, Transcription
Version 1.28.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL (>= 2)
Depends R (>= 2.15.0), edgeR, DESeq
Imports
System Requirements
URL
See More
Suggests ShortRead, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me metagene, metagene2
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DBChIP_1.28.0.tar.gz
Windows Binary DBChIP_1.28.0.zip
Mac OS X 10.11 (El Capitan) DBChIP_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DBChIP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DBChIP
Bioc Package Browser https://code.bioconductor.org/browse/DBChIP/
Package Short Url https://bioconductor.org/packages/DBChIP/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive