CancerInSilico

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see CancerInSilico.

An R interface for computational modeling of tumor progression


Bioconductor version: 3.9

The CancerInSilico package provides an R interface for running mathematical models of tumor progresson and generating gene expression data from the results. This package has the underlying models implemented in C++ and the output and analysis features implemented in R.

Author: Thomas D. Sherman, Raymond Cheng, Elana J. Fertig

Maintainer: Thomas D. Sherman <tomsherman159 at gmail.com>, Elana J. Fertig <ejfertig at jhmi.edu>

Citation (from within R, enter citation("CancerInSilico")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CancerInSilico")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CancerInSilico")
The CancerInSilico Package HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, CellBiology, GeneExpression, ImmunoOncology, MathematicalBiology, RNASeq, SingleCell, Software, SystemsBiology
Version 2.4.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL-2
Depends R (>= 3.4), Rcpp
Imports methods, utils, graphics, stats
System Requirements
URL
See More
Suggests testthat, knitr, rmarkdown, BiocStyle, Rtsne, viridis, rgl
Linking To Rcpp, BH
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CancerInSilico_2.4.0.tar.gz
Windows Binary CancerInSilico_2.4.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) CancerInSilico_2.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CancerInSilico
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CancerInSilico
Bioc Package Browser https://code.bioconductor.org/browse/CancerInSilico/
Package Short Url https://bioconductor.org/packages/CancerInSilico/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive