CSSP

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CSSP.

ChIP-Seq Statistical Power


Bioconductor version: 3.9

Power computation for ChIP-Seq data based on Bayesian estimation for local poisson counting process.

Author: Chandler Zuo, Sunduz Keles

Maintainer: Chandler Zuo<zuo at stat.wisc.edu>

Citation (from within R, enter citation("CSSP")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CSSP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CSSP")
cssp.pdf PDF R Script
Reference Manual PDF

Details

biocViews Bayesian, ChIPSeq, QualityControl, Sequencing, Software
Version 1.22.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-2
Depends
Imports methods, splines, stats, utils
System Requirements
URL
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Suggests testthat
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CSSP_1.22.0.tar.gz
Windows Binary CSSP_1.22.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) CSSP_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CSSP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CSSP
Bioc Package Browser https://code.bioconductor.org/browse/CSSP/
Package Short Url https://bioconductor.org/packages/CSSP/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive