CHARGE

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CHARGE.

CHARGE: CHromosome Assessment in R from Gene Expression data


Bioconductor version: 3.9

Identifies genomic duplications or deletions from gene expression data.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at sahmri.com>

Citation (from within R, enter citation("CHARGE")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CHARGE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHARGE")
CHARGE_Example PDF R Script
Reference Manual PDF

Details

biocViews Clustering, GeneExpression, Software
Version 1.4.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL-2
Depends R (>= 3.5), GenomicRanges, methods
Imports SummarizedExperiment, FactoMineR, factoextra, IRanges, graphics, modes, parallel, plyr, cluster, diptest, stats, matrixStats
System Requirements
URL
See More
Suggests roxygen2, EnsDb.Hsapiens.v86
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CHARGE_1.4.0.tar.gz
Windows Binary CHARGE_1.4.0.zip
Mac OS X 10.11 (El Capitan) CHARGE_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CHARGE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CHARGE
Bioc Package Browser https://code.bioconductor.org/browse/CHARGE/
Package Short Url https://bioconductor.org/packages/CHARGE/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive