BiocWorkflowTools

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BiocWorkflowTools.

Tools to aid the development of Bioconductor Workflow packages


Bioconductor version: 3.9

Provides functions to ease the transition between Rmarkdown and LaTeX documents when authoring a Bioconductor Workflow.

Author: Mike Smith [aut, cre], Andrzej OleÅ› [aut]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("BiocWorkflowTools")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocWorkflowTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocWorkflowTools")
Converting Rmarkdown to F1000Research LaTeX Format HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ReportWriting, Software
Version 1.10.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License MIT + file LICENSE
Depends R (>= 3.4)
Imports BiocStyle, bookdown, devtools, git2r, httr, knitr, rmarkdown, rstudioapi, stringr, tools, utils, usethis
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me BiocMetaWorkflow, CAGEWorkflow, recountWorkflow, SingscoreAMLMutations
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocWorkflowTools_1.10.0.tar.gz
Windows Binary BiocWorkflowTools_1.10.0.zip
Mac OS X 10.11 (El Capitan) BiocWorkflowTools_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocWorkflowTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocWorkflowTools
Bioc Package Browser https://code.bioconductor.org/browse/BiocWorkflowTools/
Package Short Url https://bioconductor.org/packages/BiocWorkflowTools/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive