BiocCheck

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BiocCheck.

Bioconductor-specific package checks


Bioconductor version: 3.9

Executes Bioconductor-specific package checks.

Author: Bioconductor Package Maintainer [aut, cre], Lori Shepherd [ctb], Daniel von Twisk [ctb], Kevin Rue [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BiocCheck")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocCheck")
BiocCheck: Ensuring Bioconductor package guidelines HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.20.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports biocViews(>= 1.33.7), BiocManager, stringdist, graph, httr, tools, optparse, codetools, methods, utils, knitr
System Requirements
URL https://github.com/Bioconductor/BiocCheck/issues
See More
Suggests RUnit, BiocGenerics, Biobase, RJSONIO, rmarkdown, devtools (>= 1.4.1), usethis, BiocStyle
Linking To
Enhances codetoolsBioC
Depends On Me
Imports Me ExperimentHubData
Suggests Me CNPBayes, curatedMetagenomicData, HMP16SData, SpectralTAD
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocCheck_1.20.0.tar.gz
Windows Binary BiocCheck_1.20.0.zip
Mac OS X 10.11 (El Capitan) BiocCheck_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocCheck
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocCheck
Bioc Package Browser https://code.bioconductor.org/browse/BiocCheck/
Package Short Url https://bioconductor.org/packages/BiocCheck/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive