BayesPeak

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see BayesPeak.

Bayesian Analysis of ChIP-seq Data


Bioconductor version: 3.9

This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data.

Author: Christiana Spyrou, Jonathan Cairns, Rory Stark, Andy Lynch, Simon Tavar\\'{e},

Maintainer: Jonathan Cairns <jonathan.cairns at babraham.ac.uk>

Citation (from within R, enter citation("BayesPeak")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BayesPeak")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BayesPeak")
BayesPeak Vignette PDF R Script
Reference Manual PDF

Details

biocViews ChIPSeq, Software
Version 1.36.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License GPL (>= 2)
Depends R (>= 2.14), IRanges
Imports IRanges, graphics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BayesPeak_1.36.0.tar.gz
Windows Binary BayesPeak_1.36.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) BayesPeak_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BayesPeak
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BayesPeak
Bioc Package Browser https://code.bioconductor.org/browse/BayesPeak/
Package Short Url https://bioconductor.org/packages/BayesPeak/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive