AffyRNADegradation

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see AffyRNADegradation.

Analyze and correct probe positional bias in microarray data due to RNA degradation


Bioconductor version: 3.9

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

Author: Mario Fasold

Maintainer: Mario Fasold <fasold at izbi.uni-leipzig.de>

Citation (from within R, enter citation("AffyRNADegradation")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AffyRNADegradation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffyRNADegradation")
AffyRNADegradation Example PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software
Version 1.30.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License GPL-2
Depends R (>= 2.9.0), methods, affy
Imports
System Requirements
URL
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Suggests AmpAffyExample
Linking To
Enhances
Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AffyRNADegradation_1.30.0.tar.gz
Windows Binary AffyRNADegradation_1.30.0.zip
Mac OS X 10.11 (El Capitan) AffyRNADegradation_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AffyRNADegradation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AffyRNADegradation
Bioc Package Browser https://code.bioconductor.org/browse/AffyRNADegradation/
Package Short Url https://bioconductor.org/packages/AffyRNADegradation/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive