GenRank

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GenRank.

Candidate gene prioritization based on convergent evidence


Bioconductor version: 3.7

Methods for ranking genes based on convergent evidence obtained from multiple independent evidence layers. This package adapts three methods that are popular for meta-analysis.

Author: Chakravarthi Kanduri

Maintainer: Chakravarthi Kanduri <chakra.kanduri at gmail.com>

Citation (from within R, enter citation("GenRank")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenRank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenRank")
Introduction to GenRank Package HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CopyNumberVariation, GeneExpression, Genetics, Microarray, SNP, Sequencing, Software
Version 1.8.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License Artistic-2.0
Depends R (>= 3.2.3)
Imports matrixStats, reshape2, survcomp
System Requirements
URL https://github.com/chakri9/GenRank
Bug Reports https://github.com/chakri9/GenRank/issues
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Suggests knitr, rmarkdown, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenRank_1.8.0.tar.gz
Windows Binary GenRank_1.8.0.zip
Mac OS X 10.11 (El Capitan) GenRank_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GenRank
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenRank
Package Short Url https://bioconductor.org/packages/GenRank/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive