CHANGES IN VERSION 1.2.3 ------------------------ BUG FIXES * reacCounts() can handle annotations that contain repeated gene names in different chromosomes (bug reported by Cees Oudejans). CHANGES IN VERSION 1.2.2 ------------------------ BUG FIXES * DUReport() no longer fails when junctions counts are zero (bug reported by David Esteve). CHANGES IN VERSION 1.2.1 ------------------------ BUG FIXES * AsDiscover() no longer contains mixed row data for some IR and IR* bins in irPIR table. * DUReport() calculates correctly junction ratio for junctions sharing their end in junction.counts table. * DUReport() no longer fails when there are no junctions that share their start or end (bug reported by Enamul Huq). * reacCounts() requires an explicit targets argument, instead of taking it from the global environment (in which may not exist with that name). CHANGES IN VERSION 1.1.0 ------------------------ NEW FEATURES * New ASpli_binGenome.log file. It reports the number of features being processed CHANGES IN VERSION 0.98 ------------------------- NEW FEATURES * Multiple bins are reclassified using annotated junctions