Package: illuminaio
===================

Version 0.13.1 [2016-01-12]
o DEPRECATED: readBPM() is deprecated because it was only a stub
  that never really worked. (Issues #5 and #6)


Version: 0.13.0 [2015-10-23]
o The version number was bumped for the Bioconductor devel version,
  which is now BioC v3.3 for R (>= 3.3.0).


Version: 0.12.0 [2015-10-13]
o The version number was bumped for the Bioconductor release version,
  which is now BioC v3.2 for R (>= 3.2.2).


Version: 0.11.2 [2015-09-11]
o BUG FIX: readIDAT() can now read non-encrypted IDAT files with 
  strings longer than 127 characters.
o BUG FIX: readIDAT() incorrectly assumed that there were exactly 
  two blocks in RunInfo fields of non-encrypted (v3) IDAT files.
  Thanks to Gordon Bean (GitHub @brazilbean) for reporting on and
  contributing with code for the above two bugs. (Issue #2)


Version: 0.11.1 [2015-07-29]
o Updated the BiocViews field of DESCRIPTION.


Version: 0.11.0 [2015-04-16]
o The version number was bumped for the Bioconductor devel version,
  which is now BioC v3.2 for R (>= 3.3.0).


Version: 0.10.0 [2015-04-16]
o The version number was bumped for the Bioconductor release version,
  which is now BioC v3.1 for R (>= 3.2.0).


Version: 0.9.1 [2015-02-25]
o Modified code for reading encrypted idat files to cope with VeraCode data.


Version: 0.9.0 [2014-10-13]
o The version number was bumped for the Bioconductor devel version,
  which is now BioC v3.1 for R (>= 3.2.0).


Version: 0.8.0 [2014-10-13]
o The version number was bumped for the Bioconductor release version,
  which is now BioC v3.0 for R (>= 3.1.1).


Version: 0.7.2 [2014-10-02]
o Now on GitHub.


Version: 0.7.1 [2014-09-21]
o The vignette now reads the GenomeStudio example file from the
  IlluminaDataTestFiles package instead of the internet.
o Updated CITATION.
o Added citation to vignette.


Version: 0.7.0 [2014-04-11]
o The version number was bumped for the Bioconductor devel version,
  which is now BioC v2.15 for R (>= 3.1.0).


Version: 0.6.0 [2014-04-11]
o The version number was bumped for the Bioconductor release version,
  which is now BioC v2.14 for R (>= 3.1.0).
 

Version: 0.5.6 [2014-03-10]
o Added a CITATION file, cf. citation("illuminaio").


Version: 0.5.5 [2014-01-19]
o Added support for encrypted IDAT files where not all data fields are of the
  same length e.g. HumanHap550 v1.


Version: 0.5.2 [2013-11-05]
o moved testData to IlluminaDataTestFiles.
o Added unitTests for encrypted IDATs.


Version: 0.5.1 [2013-11-04]
o Resshuffled internal code in readIDAT_nonenc so that seek() is always forward based.

Version: 0.5.0 [2013-10-14; BioC 2.14]
o The version number was bumped for the Bioconductor devel version.
o No updates.


Version: 0.4.0 [2013-10-14; BioC 2.13]
o The version number was bumped for the Bioconductor release version.
o No updates.


Version: 0.3.9 [2013-09-13]
o Added vignette giving examples of usage and demonstrating comparison
  with GenomeStudio output;


Version: 0.3.8 [2013-09-12]
o Bug fixes, renaming of readIDAT_bin to readIDAT_nonenc.


Version: 0.3.6 [2013-08-21]
o Added one parent function readIDAT which checks file format
  and dispatches to the relevant subfunction.


Version: 0.3.5 [2013-08-02]
o Cleaned up internal code of readBPM().
o ROBUSTNESS: Added unit tests for readBPM().  Note that these are
  only run if environment variable '_R_CHECK_FULL_' is set, i.e.
  they will *not* be perfomed on the Bioconductor servers.


Version: 0.3.0 [2013-04-03; BioC 2.13]
o The version number was bumped for the Bioconductor devel version.
o No updates.


Version: 0.2.0 [2013-04-03; BioC 2.12]
o The version number was bumped for the Bioconductor release version.
o No updates.


Version: 0.1.5 [2012-11-28]
o Fixed typos in help for readBPM() and readIDAT().


Version: 0.1.4 [2012-11-27]
o Exporting readBPM().


Version: 0.1.3 [2012-11-12]
o Added system tests for readIDAT() on example files from 'hapmap370k' package.


Version: 0.1.2 [2012-11-07]
o Now readIDAT() guarantees to close any connections it opens.  
  Also tidied up its code by defining local read functions.


Version: 0.1.1 [2012-1]
o Added system tests for readIDAT() on example files from 'minfiData' package.


Version: 0.1.0 [2012-10-09]
o Package added to the BioC repository.
o Created.