Version 0.99.0 Initial package submitted. Version 0.99.2 Codes: Added calls to match.args() for partial matching. Added calls to isTRUE() for checking logical inputs. Replaces cat() with message(). Vignette: Tabs are replaced by spaces. Added some math notations. R Dependency: Package built using R-devel version 3.3.0. R Dependecy updated to R (>= 3.3.0) in preparation for next Bioconductor release. Version 0.99.3 Codes: All comments removed. ' \n' are removed at end of messages, or the space before '\n' are removed.