Package: smoppix
Type: Package
Title: Analyze Single Molecule Spatial Omics Data Using the
        Probabilistic Index
Version: 1.3.0
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: Test for univariate and bivariate spatial patterns in
        spatial omics data with single-molecule resolution. The tests
        implemented allow for analysis of nested designs and are
        automatically calibrated to different biological specimens.
        Tests for aggregation, colocalization, gradients and vicinity
        to cell edge or centroid are provided.
License: GPL-2
Encoding: UTF-8
Imports: spatstat.geom(>=
        3.2.0),spatstat.random,methods,BiocParallel,SummarizedExperiment,SpatialExperiment,scam,Rdpack,stats,utils,extraDistr,lmerTest,lme4,ggplot2,graphics,grDevices,Rcpp
        (>= 1.0.11),spatstat.model,openxlsx,Rfast
Suggests:
        testthat,rmarkdown,knitr,DropletUtils,polyCub,RImageJROI,sp,ape,htmltools,funkycells,glmnet,doParallel
RdMacros: Rdpack
RoxygenNote: 7.3.3
biocViews: Transcriptomics, Spatial, SingleCell
Depends: R (>= 4.4.0)
VignetteBuilder: knitr
BugReports: https://github.com/sthawinke/smoppix/issues
URL: https://github.com/sthawinke/smoppix
LinkingTo: Rcpp
Config/pak/sysreqs: cmake make libmagick++-dev gsfonts libicu-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-11-03 17:32:49 UTC
RemoteUrl: https://github.com/bioc/smoppix
RemoteRef: HEAD
RemoteSha: fe4ac0dcb7829d0fe77454f7509b211f49c984b9
NeedsCompilation: yes
Packaged: 2025-11-03 21:50:01 UTC; root
Author: Stijn Hawinkel [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>
Built: R 4.6.0; x86_64-w64-mingw32; 2025-11-03 21:52:55 UTC; windows
Archs: x64
