gVenn
This is the development version of gVenn; to use it, please install the devel version of Bioconductor.
Proportional Venn and UpSet Diagrams for Gene Sets and Genomic Regions
Bioconductor version: Development (3.22)
Tools to compute and visualize overlaps between gene sets or genomic regions. Venn diagrams with proportional areas are provided, while UpSet plots are recommended for larger numbers of sets. The package supports GRanges and GRangesList inputs, and integrates with analysis workflows for ChIP-seq, ATAC-seq, and other genomic interval data. It generates clean, interpretable, and publication-ready figures.
Author: Christophe Tav [aut, cre]
Maintainer: Christophe Tav <christophe.tav at gmail.com>
citation("gVenn")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("gVenn")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gVenn")| gVenn | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ATACSeq, ChIPSeq, DataRepresentation, Epigenetics, Sequencing, Software, Visualization |
| Version | 0.99.1 |
| In Bioconductor since | BioC 3.22 (R-4.5) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0) |
| Imports | ComplexHeatmap, eulerr, GenomicRanges, IRanges, lubridate, methods, stringr, writexl |
| System Requirements | |
| URL | https://github.com/ckntav/gVenn |
| Bug Reports | https://github.com/ckntav/gVenn/issues |
See More
| Suggests | testthat (>= 3.0.0), ggplot2, withr, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gVenn_0.99.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | gVenn_0.99.1.tgz |
| macOS Binary (arm64) | gVenn_0.99.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gVenn |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gVenn |
| Bioc Package Browser | https://code.bioconductor.org/browse/gVenn/ |
| Package Short Url | https://bioconductor.org/packages/gVenn/ |
| Package Downloads Report | Download Stats |