Package: lisaClust
Type: Package
Title: lisaClust: Clustering of Local Indicators of Spatial Association
Version: 1.18.0
Authors@R: c(
    person("Ellis", "Patrick", , "ellis.patrick@sydney.edu.au", role = c("aut", "cre")),
    person("Nicolas", "Canete", , "nicolas.canete@sydney.edu.au", role = "aut"),
    person("Nicholas", "Robertson", , "nicholas.robertson@sydney.edu.au", role = "ctb"),
    person("Alex", "Qin", , "alex.qin@sydney.edu.au", role = "ctb"),
    person("Shreya", "Rao", "shreya.rajeshrao@sydney.edu.au", role = "ctb")
  )
Description: lisaClust provides a series of functions to identify and
        visualise regions of tissue where spatial associations between
        cell-types is similar. This package can be used to provide a
        high-level summary of cell-type colocalization in multiplexed
        imaging data that has been segmented at a single-cell
        resolution.
License: GPL (>=2)
biocViews: SingleCell, CellBasedAssays, Spatial
Encoding: UTF-8
Depends: R (>= 4.1.0)
VignetteBuilder: knitr
BugReports: https://github.com/ellispatrick/lisaClust/issues
URL: https://ellispatrick.github.io/lisaClust/,
        https://github.com/ellispatrick/lisaClust
Imports: ggplot2, class, concaveman, grid, BiocParallel,
        spatstat.explore, spatstat.geom, BiocGenerics, S4Vectors,
        methods, spicyR, purrr, stats, data.table, dplyr, tidyr,
        SingleCellExperiment, SpatialExperiment, SummarizedExperiment,
        pheatmap, spatstat.random, lifecycle, simpleSeg, rlang,
Suggests: SpatialDatasets, BiocStyle, knitr, rmarkdown, testthat (>=
        3.0.0)
RoxygenNote: 7.3.2
Config/testthat/edition: 3
Config/pak/sysreqs: libabsl-dev cmake libfftw3-dev libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libgdal-dev gdal-bin
        libgeos-dev libglpk-dev make libharfbuzz-dev libmagick++-dev
        gsfonts libicu-dev libjpeg-dev libpng-dev libtiff-dev
        libxml2-dev libssl-dev libproj-dev libsqlite3-dev
        libudunits2-dev libnode-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:06:59 UTC
RemoteUrl: https://github.com/bioc/lisaClust
RemoteRef: RELEASE_3_22
RemoteSha: 8ecd5028923574f8a2dd2d57277147b042332725
NeedsCompilation: no
Packaged: 2026-01-24 21:15:04 UTC; root
Author: Ellis Patrick [aut, cre],
  Nicolas Canete [aut],
  Nicholas Robertson [ctb],
  Alex Qin [ctb],
  Shreya shreya.rajeshrao@sydney.edu.au Rao [ctb]
Maintainer: Ellis Patrick <ellis.patrick@sydney.edu.au>
Built: R 4.5.2; ; 2026-01-24 21:17:47 UTC; windows
