Package: breakpointR
Type: Package
Title: Find breakpoints in Strand-seq data
Version: 1.28.0
Date: 2021-11-20
Author: David Porubsky, Ashley Sanders, Aaron Taudt
Maintainer: David Porubsky <david.porubsky@gmail.com>
Description: This package implements functions for finding breakpoints,
        plotting and export of Strand-seq data.
Depends: R (>= 3.5), GenomicRanges, cowplot, breakpointRdata
Imports: methods, utils, grDevices, stats, S4Vectors, GenomeInfoDb (>=
        1.12.3), IRanges, Rsamtools, GenomicAlignments, ggplot2,
        BiocGenerics, gtools, doParallel, foreach
Suggests: knitr, BiocStyle, testthat
License: file LICENSE
LazyLoad: yes
VignetteBuilder: knitr
Packaged: 2025-11-11 13:30:34 UTC; root
biocViews: Software, Sequencing, DNASeq, SingleCell, Coverage
URL: https://github.com/daewoooo/BreakPointR
RoxygenNote: 7.2.3
Config/pak/sysreqs: libbz2-dev liblzma-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:47:40 UTC
RemoteUrl: https://github.com/bioc/breakpointR
RemoteRef: RELEASE_3_22
RemoteSha: 65b23a9244dae4085767b8caa03a9e549eaf9988
NeedsCompilation: no
Built: R 4.5.2; ; 2025-11-11 13:36:09 UTC; windows
