Changes in version 0.99.8                        

  - Add feature scaling options for PCA and UMAP

                       Changes in version 0.99.7                        

  - SCE/SPE-compatible

                        Changes in version 0.1.6                        

  - Fix compatibility with SeuratWrappers

                        Changes in version 0.1.5                        

  - Implemented SmoothLabels for k-nearest neighbors cluster label
    smoothing
  - Parallel clustering for Leiden graph-based clustering
  - Version depedency on leidenAlg (>= 1.1.0) for compatibility with
    igraph (>= 1.5.0)
  - Seed setting for clustering
  - Neighborhood sampling for computing neighborhood feature matrices.
    See arguments sample_size, sample_renorm and seed in function
    ComputeBanksy

                        Changes in version 0.1.4                        

  - Implemented Azimuthal Gabor filters in ComputeBanksy, with the
    number of harmonics determined by the M argument. To obtain similar
    results as version 0.1.3, use M=0
  - RunPCA and RunUMAP renamed to RunBanksyPCA and RunBanksyUMAP
    respectively to avoid namespace collisions with other packages
  - Changed some function argument names (e.g. spatialMode to
    spatial_mode)

                        Changes in version 0.1.3                        

  - Interoperability with SingleCellExperiment with asBanksyObject
  - Passing Bioc and R CMD checks

                        Changes in version 0.1.2                        

  - BanksyObject: dimensionality reduction slot name changed to
    reduction
  - RunPCA and RunUMAP
  - Plotting is generalised (plotReduction instead of plotUMAP /
    plotPCA)
  - ConnectClusters improved and returns BanksyObject
  - ARI computation and plotting

                        Changes in version 0.0.9                        

  - Legacy version