yamss
Tools for high-throughput metabolomics
Bioconductor version: Release (3.19)
Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis. At the core of these methods is a peak detection phase that pools information across all samples simultaneously. This is in contrast to other methods that detect peaks in a sample-by-sample basis.
Author: Leslie Myint [cre, aut] , Kasper Daniel Hansen [aut]
Maintainer: Leslie Myint <leslie.myint at gmail.com>
citation("yamss")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("yamss")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("yamss")
yamss User's Guide | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | MassSpectrometry, Metabolomics, PeakDetection, Software |
Version | 1.30.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
License | Artistic-2.0 |
Depends | R (>= 4.3.0), methods, BiocGenerics(>= 0.15.3), SummarizedExperiment |
Imports | IRanges, stats, S4Vectors, EBImage, Matrix, mzR, data.table, grDevices, limma |
System Requirements | |
URL | https://github.com/hansenlab/yamss |
Bug Reports | https://github.com/hansenlab/yamss/issues |
See More
Suggests | BiocStyle, knitr, rmarkdown, digest, mtbls2, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | yamss_1.30.0.tar.gz |
Windows Binary | yamss_1.30.0.zip (64-bit only) |
macOS Binary (x86_64) | yamss_1.30.0.tgz |
macOS Binary (arm64) | yamss_1.30.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/yamss |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/yamss |
Bioc Package Browser | https://code.bioconductor.org/browse/yamss/ |
Package Short Url | https://bioconductor.org/packages/yamss/ |
Package Downloads Report | Download Stats |