spkTools

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see spkTools.

Methods for Spike-in Arrays


Bioconductor version: 3.13

The package contains functions that can be used to compare expression measures on different array platforms.

Author: Matthew N McCall <mccallm at gmail.com>, Rafael A Irizarry <rafa at jhu.edu>

Maintainer: Matthew N McCall <mccallm at gmail.com>

Citation (from within R, enter citation("spkTools")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("spkTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spkTools")
spkTools: Spike-in Data Analysis and Visualization PDF R Script
Reference Manual PDF

Details

biocViews Microarray, Software, Technology
Version 1.48.0
In Bioconductor since BioC 2.4 (R-2.9) (15 years)
License GPL (>= 2)
Depends R (>= 2.7.0), Biobase(>= 2.5.5)
Imports Biobase(>= 2.5.5), graphics, grDevices, gtools, methods, RColorBrewer, stats, utils
System Requirements
URL http://bioconductor.org
See More
Suggests xtable
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package spkTools_1.48.0.tar.gz
Windows Binary spkTools_1.48.0.zip
macOS 10.13 (High Sierra) spkTools_1.48.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/spkTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/spkTools
Bioc Package Browser https://code.bioconductor.org/browse/spkTools/
Package Short Url https://bioconductor.org/packages/spkTools/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive