shinyTANDEM

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see shinyTANDEM.

Provides a GUI for rTANDEM


Bioconductor version: 3.12

This package provides a GUI interface for rTANDEM. The GUI is primarily designed to visualize rTANDEM result object or result xml files. But it will also provides an interface for creating parameter objects, launching searches or performing conversions between R objects and xml files.

Author: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Maintainer: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>

Citation (from within R, enter citation("shinyTANDEM")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("shinyTANDEM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyTANDEM")
shinyTANDEM user guide PDF
Reference Manual PDF
README Text
NEWS Text

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 1.28.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-3
Depends rTANDEM(>= 1.3.5), shiny, mixtools, methods, xtable
Imports
System Requirements
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package shinyTANDEM_1.28.0.tar.gz
Windows Binary shinyTANDEM_1.28.0.zip
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/shinyTANDEM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/shinyTANDEM
Package Short Url https://bioconductor.org/packages/shinyTANDEM/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive