pathprint
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pathprintGEOData.
Pathway fingerprinting for analysis of gene expression arrays
Bioconductor version: 3.12
Algorithms to convert a gene expression array provided as an expression table or a GEO reference to a 'pathway fingerprint', a vector of discrete ternary scores representing high (1), low(-1) or insignificant (0) expression in a suite of pathways.
Author: Gabriel Altschuler, Sokratis Kariotis
Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
citation("pathprint")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pathprint")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | GeneExpression, KEGG, Reactome, Software, Transcription |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | GPL |
| Depends | R (>= 3.4) |
| Imports | stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | ALL, GEOquery, pathprintGEOData, SummarizedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | pathprintGEOData |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/pathprint |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pathprint |
| Package Short Url | https://bioconductor.org/packages/pathprint/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |