HCABrowser

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see HCABrowser.

Browse the Human Cell Atlas data portal


Bioconductor version: 3.12

Search, browse, reference, and download resources from the Human Cell Atlas data portal. Development of this package is supported through funds from the Chan / Zuckerberg initiative.

Author: Daniel Van Twisk [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("HCABrowser")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HCABrowser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HCABrowser")
HCABrowser HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Sequencing, SingleCell, Software
Version 1.6.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License Artistic-2.0
Depends R (>= 3.6.0), dplyr, AnVIL
Imports BiocFileCache, googleAuthR, httr, methods, readr, rlang, utils
System Requirements
URL https://github.com/Bioconductor/HCABrowser
Bug Reports https://github.com/Bioconductor/HCABrowser/issues
See More
Suggests BiocStyle, knitr, rmarkdown, stringr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me HCAMatrixBrowser
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HCABrowser_1.6.0.tar.gz
Windows Binary HCABrowser_1.6.0.zip
macOS 10.13 (High Sierra) HCABrowser_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HCABrowser
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HCABrowser
Bioc Package Browser https://code.bioconductor.org/browse/HCABrowser/
Package Short Url https://bioconductor.org/packages/HCABrowser/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive